Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11127699 chr3:80551354 G/A 2.79E-5 178 19.53 24.53 27.2 KM Plot
PCPG rs111305290 chr7:158671423 G/C 0 175 25.53 20.37 3.17 KM Plot
PCPG rs111314343 chr9:86492810 T/C 0.000126 175 26.57 24.7 14.47 KM Plot
PCPG rs111331364 chr18:44153339 G/A 1.24E-7 174 25.08 27.2 19.87 KM Plot
PCPG rs111353348 chr3:129052507 T/TTAAA 9.52E-5 176 25.17 27.93 19.87 KM Plot
PCPG rs111403728 chr13:114163627 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs111480316 chr20:6003219 A/G 0 178 25.67 23.08 2.93 KM Plot
PCPG rs111494372 chr14:74436418 T/TAATA 3.34E-6 177 25.4 28.47 10.3 KM Plot
PCPG rs111516966 chr12:124035781 G/A 0.000484 172 25.87 19.2 20.13 KM Plot
PCPG rs111567050 chr11:18159938 T/C 4.95E-6 174 26.53 23.48 8.33 KM Plot
PCPG rs111571503 chr14:74288430 A/G 1.15E-5 174 25.87 26.57 10.43 KM Plot
PCPG rs111580405 chr12:56739557 A/G 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs11159056 chr14:74473607 T/C 4.64E-7 174 25.17 30.93 7.4 KM Plot
PCPG rs11159059 chr14:74502495 C/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs11159060 chr14:74503859 G/T 0.000221 175 25.4 27.43 10.43 KM Plot